Payment Gateways in South Africa: Complete Guide for Online Stores
The main payment gateways for South African online stores are PayFast, Yoco, SnapScan, Ozow, PayPal, Peach Payments, PayFlex, and iKhokha. PayFast and Yoco are the most widely used for WooCommerce stores, supporting ZAR pricing, card payments, and EFT with straightforward plugin integration. Below is a full comparison to help you choose the right one.
Payment gateway comparison
| Gateway | Best for | Typical fee | Payment methods | WooCommerce plugin |
|---|---|---|---|---|
| PayFast | Standard WooCommerce stores | ~2.9% + R2 | Card, EFT, Instant EFT | Free official plugin |
| Yoco | Stores with a physical location too | ~2.6%-2.95% | Card, online + in-person | Yes |
| Ozow | Lower fees on higher-value orders | Flat fee (not %) | Instant EFT only | Yes |
| SnapScan | Mobile-first, QR-code checkout | ~2.95% | QR code / app | Yes |
| PayPal | International customers | ~3.9% + fixed fee (varies by currency) | PayPal balance, card | Yes |
| Crypto gateways | Niche/early-adopter stores | Varies by provider | Bitcoin and other cryptocurrencies | Third-party plugin |
How does a payment gateway work?
A payment gateway securely captures a customer's payment details at checkout, encrypts them, and sends the transaction to the customer's bank for authorisation. Once approved, the gateway confirms the sale to your store and the funds are settled to your merchant account, typically within 1-3 business days for South African providers.
What are the transaction fees for payment gateways in South Africa?
South African payment gateway fees typically range from 2.0% to 3.5% per transaction. PayFast charges around 2.9% + R2 per transaction, Yoco charges around 2.6%-2.95%, and Ozow (Instant EFT) charges a flat fee rather than a percentage, which can be cheaper for higher-value orders.
Can I accept cryptocurrency payments on my South African online store?
Yes. Crypto payment gateways can be integrated into a WooCommerce store to accept Bitcoin and other cryptocurrencies alongside standard ZAR payment methods. This is not yet mainstream in South Africa, so it is usually added as an additional option rather than a replacement for card and EFT payments.
Is Instant EFT better than a card payment gateway?
Instant EFT services like Ozow are popular in South Africa because many shoppers don't have credit cards but do have bank accounts. Instant EFT often has lower fees than card processing and reduces fraud risk, but it depends on the customer's bank supporting real-time payment confirmation.
Which payment gateway should I choose for my WooCommerce store?
For most South African WooCommerce stores, PayFast is the standard choice because it supports card, EFT, and Instant EFT in one integration with a free WooCommerce plugin. Yoco is a strong alternative if you also need an in-person card machine for a physical location alongside your online store. Not sure WooCommerce is the right platform in the first place? See our WooCommerce vs Shopify comparison.
Ready to set up your store with the right payment gateway from day one? See our ecommerce website pricing and packages, or get in touch for a quote.
Last updated: September 2026.


















